首 页网站地图RSS订阅高级搜索保留
生物实验网
设为首页
加入收藏
站长信箱
主页|bio资讯 |DNA实验 |PCR实验 |RNA实验 |蛋白实验 |基本实验技术 |生化与免疫技术 |生物信息学 |细胞生物学 |杂交实验 |学科相关 |交叉领域 |
当前位置: 主页>生物信息学>数据库> 查看文章详细内容
站内资料搜索
热门关键字: dna  EST  r DNA  pcr  抗体  rt pcr  t dna  tail pcr  PCR sscp  cDNA

相关文章
>常用在线数据库
> 日本科技信息门户——Sci
> 生物信息学常用数据库---
> 生物信息学常用数据库---
> 生物信息学常用数据库---
> 生物信息学简概及教程(
> 专业文献与数据库
> 关于RefSeq:NCBI参考序
> CNKI免费资源收集
> 最新CNKI免费帐号
热点文章
EMBnet 专业节点
Mitochondrion and chloro
Insects相关数据库
Invertebrates相关数据库
Plants相关数据库
Fungi相关数据库
Bacteria相关数据库
Archaea相关数据库
Viruses相关数据库
生物信息学所用的方法和技
生物分子数据库
[ 文章来源: | 文章作者: | 发布时间:2006-12-25|  字体: [ ]  

参考文献

1•  Altschul SF, Gish W, Miller W, Myers EW , Lipman DJ. 1990. Basic local alignment search tool. J. Mol. Biol., 215:403-410.

2•  Altchul SF, et al. 1997. Gapped blast and psi-blast: a new generation of protein database search programs. Nucleic Acids Res., 25(17):3389-3402.

3•  Appel RD, Bairoch A, Hochstrasser DF. 1994. A new generation of information retrieval tools for biologists: the example of the ExPASy WWW server. Trends Biochem Sci , 19(6) : 258-60 .

4•  Attwood TK, Bradley P, Flower DR, Gaulton A, Maudling N, Mitchell AL, Moulton G, Nordle A, Paine K, Taylor P, Uddin A, Zygouri C. 2003. PRINTS and its automatic supplement, prePRINTS. Nucleic Acids Res. 31(1): 400-402.

5•  Bairoch A. 1991. SEQANALREF: a sequence analysis bibliographic reference databank. Comput. Appl. Biosci. , 7: 268-268.

6•  Bairoch A, Apweiler R. 1997. The SWISS-PROT protein sequence database: its relevance to human molecular medical research. J. Mol. Med. 75:312-316.

7•  Bairoch A, Apweiler R. 2000. The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. Nucleic Acids Res. 28:45-48.

8•  Bairoch A. 2000. The ENZYME database in 2000. Nucleic Acids Res. , 28: 304-305.

9•  Barker WC, et al. 2000. The Protein Information Resource (PIR) . Nucleic Acids Res. 28, 41-44.

10•  Baxevanis AD, Francis BF. 1998. Bioinformatics: A practical guide to the analysis of gnes and proteins. John Wiley & Sons, New York .

11•  Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE. 2000. The Protein Data Bank. Nucleic Acids Research, 28 , 235-242.

12•  Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Rapp BA, Wheeler DL. 2001. GenBank. Nucleic Acids Res., 28(1), 15-18.

13•  Blake JA, Eppig JT, Richardson JE, Davisson MT. 2000. The Mouse Genome Database (MGD): expanding genetic and genomic resources for the laboratory mouse. The Mouse Genome Database Group. Nucleic Acids Res , 28(1) : 108-111 .

14•  Boguski MS, Lowe TM, Tolstoshev CM. 1993. dbEST--database for "expressed sequence tags". Nat. Genet. 4(4), 332-333.

15•  Boguski MS, Tolstoshev CM, Bassett DE Jr. 1994. Gene discovery in dbEST. Science, 265(5181):1993-1994.

16•  Boguski MS, Schuler GD. 1995. ESTablishing a human transcript map. Nature Genetics 10, 369-371.

17•  Brenner SE. 1995. BLAST, Blitz, BLOCKS and BEAUTY: sequence comparison on the net. Trends Genet, 11(8) : 330-331 .

18•  Bucher P & Bryan,B. 1984. Signal search analysis: a new method to localize and characterize functionally important DNA sequences. Nucl. Acids Res. 12, 287-305.

19•  Bucher P & Trifonov EN. 1986. Compilation and analysis of eukaryotic POL II promoter sequences. Nucl. Acids Res. 14, 10009-10026.

20•  Bucher P, Bairoch A. 1994. A generalized profile syntax for biomolecular sequences motifs and its function in automatic sequence interpretation. ISMB-94; Proceedings 2nd International Conference on Intelligent Systems for Molecular Biology. Altman R., Brutlag D., Karp P., Lathrop R., Searls D., Eds., pp53-61, AAAIPress, Menlo Park.

21•  Butler D. 2000. Ensembl gets a Wellcome boost. Nature, 406(6794),333.

22•  Cherry JM, Adler C, Ball C, et al. 1998. SGD: Saccharomyces Genome Database. Nucleic Acids Res, 26(1) : 73-79 .

23•  Coupaye T. 1999. Wrapping SRS with CORBA: from textual data to distributed objects. Bioinformatics , 15(4) : 333-338 .

24•  Dayhoff MO, Eck RV, Chang MA, Sochard MR. 1965. Atlas of protein sequence and structure. National Biomedical Research Foundation, Silver Spring MD.

25•  Discala C, Benigni X, Barillot E, Vaysseix G. 2000. DBcat: a catalog of 500 biological databases. Nucleic Acids Res. , 28(1): 8-9.

26•  Dodge C, Schneider R, Sander C. 1998. The HSSP database of protein structure-sequence alignments and family profiles. Nucleic Acids Res. 26(1): 313-315.

27•  Ermolaeva O, Rastogi M, Pruitt KD, Schuler GD, Bittner ML, Chen Y, Simon R, Meltzer P, Trent JM, Boguski MS. 1998. Data management and analysis for gene expression arrays. Nat Genet , 20(1) : 19-23 .

28•  Etzold T, Argos P. 1993. SRS--an indexing and retrieval tool for flat file data libraries. Comput Appl Biosci , 9(1) : 49-57 .

29•  Etzold T, Ulyanov A, Argos P. 1996. SRS: information retrieval system for molecular biology data banks. Methods Enzymol , 266:114-128 .

30•  Gardiner-Garden M, Littlejohn TG. 2001. A comparison of microarray databases. Brief Bioinform , 2(2) : 143-158 .

31•  Gasteiger E, Jung E, Bairoch A. 2001. SWISS-PROT: Connecting biological knowledge via a protein database. Curr. Issues Mol. Biol. 3:47-55.

32•  Gibrat JF, Madej T, Bryant SH. 1996. Surprising similarities in structure comparison. Current Opinion in Structural Biology. 6, 377-385.

33•  Heinemeyer T, Chen X, Karas H, Kel AE, Kel OV, Liebich I, Meinhardt T, Reuter I, Schacherer F and Wingender E. 1999. Expanding the TRANSFAC database towards an expert system of regulatory molecular mechanisms. Nucleic Acids Res., 27, 318-322.

34•  Hofmann K, Bucher P, Falquet L, Bairoch A. 1999. The PROSITE database, its status in 1999, Nucleic Acids Res. 27:215-219.

35•  Hogue CWV, Ohkawa H, and Bryant SH. 1996. A dynamic look at structures: WWW-Entrez and the molecular modeling database. Trends Biochem Sci., 21, 226-229.

36•  Hoogland C, Sanchez JC, Tonella L, Binz PA, Bairoch A, Hochstrasser DF, Appel RD. 2000. The 1999 SWISS-2DPAGE database update. Nucleic Acids Res. 28:286-288.

37•  Hubbard TJ, Ailey B, Brenner SE, Murzin AG, Chothia C. 1999. SCOP: a Structural Classification of Proteins database. Nucleic Acids Res 1999 Jan 1;27(1):254-256.

38•  Hulo N, Sigrist CJ, Le Saux V, Langendijk-Genevaux PS, Bordoli L, Gattiker A, De Castro E, Bucher P, Bairoch A. 2004. Recent improvements to the PROSITE database. Nucleic Acids Res. Database issue: D134-137.

39•  Junker VL, Apweiler R, Bairoch A. 1999. Representation of functional information in the SWISS-PROT data bank. Bioinformatics 15:1066-1007.

40•  Kabsch W, Sander C. 1983. Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features, Biopolymers, 22 : 2577-2637.

41•  Karp PD, Paley S, Zhu J. 2001. Database verification studies of SWISS-PROT and GenBank. : Bioinformatics, 17(6):526-532.

42•  Kawamoto S, et al. 2000. BodyMap: a collection of 3' ESTs for analysis of human gene expression information. Genome Res., 11:1817-1827.

43•  Kolchanov NA, et al. 1999. Transcription Regulatory Regions Database (TRRD): its status in 1999. : Nucleic Acids Res., 27(1): 303-306.

44•  Letovsky SI, Cottingham RW, Porter CJ, Li PW. 1998, GDB: the Human Genome Database. Nucleic Acids Res., 26(1), 94-99.

45•  Liebich I, Bode J, Frisch M, Wingender E. 2002. S/MARt DB: a database on scaffold/matrix attached regions. Nucleic Acids Res, 30(1) : 372-374.

46•  Lipman D, Pearson W. 1985. Rapid and sensitive protein similarity searches. Science, 227:1435-1441.

47•  Lipman D, Pearson W. 1988. Improved tools for biological sequence comparison. Proc. Natl. Academy Science, 85:24444-2448.

48•  Madej T, Gibrat JF, and Bryant SH. 1995. Threading a database of protein cores. Protein Struct. Funct. Genet. 23 356-369.

49•  McKusick , VA. 1998. Mendelian Inheritance in Man. Catalogs of Human Genes and Genetic Disorders. Baltimore : Johns Hopkins University Press, 12th edition.

50•  Murzin AG, Brenner SE, Hubbard T, Chothia C. 1995. SCOP: a structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol. , 247 : 536-540.

51•  Needleman SB, Wunsch CD. 1970. A general method applicable to the search for similarities in the amino acid sequence of two proteins. J. Mol. Biol., 48(3): 443-453.

52•  Notarangelo LD, Peitsch MC. 1996 . CD40lbase: a database of CD40L gene mutations causing X-linked hyper-IgM syndrome. Immunol. Today , 17:511-516.

53•  Ohkawa H, Ostell J, Bryant S. 1995. MMDB: An ASN.1 specification for macromolecular structure. ISMB 3, 259-267.

54•  Olson M, Hood L, Cantor C, Botstein D. 1989. A common language for physical mapping of the human genome. : Science, 245(4925), 1434-1435.

55•  O'Donovan C, Martin MJ, Glemet E, Codani JJ, Apweiler R. 1999. Removing redundancy in SWISS-PROT and TrEMBL. Bioinformatics , 15(3) : 258-259 .

56•  Pattabiraman N, Namboodiri K, Lowrey A, Gaber BP. 1990. NRL-3D: a sequence-structure database derived from the protein data bank (PDB) and searchable within the PIR environment. Protein Seq Data Anal, 3(5):387-405.

57•  Pearson P, Francomano C, Foster P, Bocchini C, Li P, McKusick V. 1994. The status of online Mendelian inheritance in man (OMIM) medio 1994. Nucleic Acids Res., 22(17): 3470-3473.

58•  Pearson WR. 1996. Effective protein sequence comparison. Methods Enzymol , 266:227-258 .

59•  Pearson WR. 1999. Flexible similarity searching with the FastA3 program package. In Bioinformatics Methods and Protocols, S. Misener and S. A. Krawetz, ed. ( Totowa , NJ : Humana Press), 185-219.

60•  Peitsch MC, Wells TNC, Stampf DR , Sussman JL. 1995. The Swiss-3DImage collection and PDB-Browser on the World-Wide Web. Trends Biochem. Sci., 20:82-83.

61•  Peitsch MC. Large scale protein modelling and model repository. 1997. Proc Int Conf Intell Syst Mol Biol. , 5: 234-236.

62•  Perier RC, Praz V, Junier T, Bonnard C and Bucher P. 2000. The Eukaryotic Promoter Database (EPD). Nucleic Acids Res., 28(1):302-303.

63•  Ringwald M, Eppig JT, Begley DA, Corradi JP, McCright IJ, Hayamizu TF, Hill DP, Kadin JA, Richardson JE. 2001. The Mouse Gene Expression Database (GXD). Nucleic Acids Res , 29(1) : 98-101 .

64•  Roberts RJ, Macelis D. 2001. REBASE--restriction enzymes and methylases. Nucleic Acids Res, 29(1):268-269.

65•  Sander C, Schneider R. 1991. Database of homology-derived protein structures. Proteins, Structure, Function & Genetics, 9 :56-68.

66•  Satoru M. 2001. Getting the appropriate set of sequences for your research: how to use sequence retrieval system on DNA Data Bank of Japan (DDBJ). Tanpakushitsu Kakusan Koso, 46(6), 764-770.

67•  Schacherer F, Choi C, Gotze U, Krull M, Pistor S, Wingender E. 2001. The TRANSPATH signal transduction database: a knowledge base on signal transduction networks. Bioinformatics 2001 Nov;17(11):1053-1057.

68•  Schuler GD, et al. 1996. A gene map of the human genome. Science 274, 540-546.

69•  Schuler GD, Epstein JA, Ohkawa H and Kans JA. 1996. Entrez: Molecular biology database and retrieval system. Methods Enzymol. 266, 141-162.

70•  Schuler GD. 1997. Pieces of the puzzle: expressed sequence tags and the catalog of human genes. J. Mol. Med. 75(10), 694-698.

71•  Sherlock G, Hernandez-Boussard T, Kasarskis A, et al. 2001. The Stanford Microarray Database. Nucleic Acids Res, 29(1):152-155.

72•  Sherry ST , Ward M, Sirotkin K. 2000. Use of molecular variation in the NCBI dbSNP database. Hum Mutat. 15(1): 68-75.

73•  Smigielski EM, Sirotkin K, Ward M, Sherry ST. 2000. dbSNP: a database of single nucleotide polymorphisms. Nucleic Acids Res. 28(1): 352-355.

74•  Soejima H, Kawamoto S, Akai J, Miyoshi O, Arai Y, Morohka T, Matsuo S, Niikawa N, Kimura A, Okubo K, Mukai T. 2001. Isolation of novel heart-specific genes using the BodyMap database. Genomics , 74(1): 115-120.

75•  Stoesser G, Baker W, van den Broek A, Camon E, Garcia-Pastor M, Kanz C, Kulikova T, Lombard V, Lopez R, Parkinson H, Redaschi N, Sterk P, Stoehr P, Tuli MA. 2001. The EMBL Nucleotide Sequence Database. Nucleic Acids Res., Vol. 29 (1), 17-21.

76•  Tuli MA, Flores TP, Cameron GN. 1996. Submission of nucleotide sequence data to EMBL/GenBank/DDBJ. Mol Biotechnol , 6(1) : 47-51 .

77•  Wahl R, Rice P, Rice CM, Kroger M. 1994. ECD--a totally integrated database of Escherichia coli K12. Nucleic Acids Res, 22(17) : 3450-3455.

78•  Wang Y, Addess KJ, Geer L, Madej T, Marchler-Bauer A, Zimmerman D, Bryant SH. 2000. MMDB: 3D structure data in Entrez. Nucleic Acids Res. 28(1): 243-245.

79•  Wang Y, Geer LY, Chappey C, Kans JA, Bryant SH. 2000. Cn3D: sequence and structure views for Entrez. Trends Biochem Sci, 25(6):300-302.

80•  Wingender E, Chen X, Fricke E, Geffers R, Hehl R, Liebich I, Krull M, Matys V, Michael H, Ohnhauser R, Pruss M, Schacherer F, Thiele S, Urbach S. 2001. The TRANSFAC system on gene expression regulation. Nucleic Acids Res., 29(1): 281-283.

81•  Wootton.JC, and Federhen.S. 1993. Statistics of local complexity in amino acid sequences and sequence databaseas. Comput.Chem. 17 : 149-163.

82•  Womble DD. 2000. GCG: The Wisconsin Package of sequence analysis programs. Methods Mol Biol , 132 : 3-22 .

83•  Womble DD. 2000. Web-based interfaces for the GCG sequence analysis programs. Methods Mol Biol , 132:23-30 .

84•  Wootton JC, Federhen S. 1996. Analysis of compositionally biased regions in sequence databases. Methods Enzymol. 266 : 554-571.

85•  Worley KC, Wiese BA, Smith RF. 1995. BEARTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res., 5:173-184.

86•  Zhang J, Madden TL. 1997. PowerBLAST: A new network BLAST application for interactive or automated sequence analysis and annotation. Genome.Res., 7:649-656.

87•  Zhang Z, Pearson WR, and Miller W. 1997. Aligning a DNA sequence with a protein sequence. J. Computational Biology, 4,339-349.

共8页: 上一页 [1] [2] [3] [4] [5] [6] [7] 8 下一页


上一篇:蛋白质单晶培养的15种方法   下一篇:基因组信息分析
设为首页 - 加入收藏 - 关于我们 - 版权申明 - 程序支持 - 联系方式 - 留言薄 - 会员中心
Power by DedeCms